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      scieNce oN the cUttiNG edGe



      The Scripps Research Institute News


      Discovery Of Bacteria’s                            one that functioned outside the cell, helping attach the   common ancestor already carried out this task.”

                                                                                                              In addition to lead author Joazeiro, the authors of
      Protein Quality Control Agent                      microbes to hosts.                                  the study, “Alanine Tails Signal Proteolysis in Bacterial
                                                           “We have  found this is  not the  complete  story,”

      Offers Insight Into Origins Of                     Joazeiro says. “Rqc2 plays a more fundamental role inside   Ribosome-Associated Quality Control,” were  Tina
                                                         of bacterial cells.”
                                                                                                           Mueller, George  Tsaprailis and Christina Chiang of
      Life                                                  The next step will be to find out whether the defective   Scripps Research in Jupiter, Fla.; Iryna Lytvyenko, Helge
                                                         virulence of strep varieties lacking Rqc2 is primarily a   Paternoga, Anna Thrun and Simon Anders of Heidelberg
         Our cells’  process for                         consequence of their failure to recycle protein fragments   University in Germany; Annika Balke and Christian
      transforming genes into                            inside the cell. As increasing varieties of pathogens   Spahn of the Institute of Medical Physics and Biophysics
      useful proteins works                              develop multi-drug resistance to antibiotics, understanding   in Berlin, Germany; Katja Nagler and Ilka Bischofs of
      much  like  an  automobile                         bacterial virulence may prove especially necessary.  Heidelberg University and the Max Planck Institute for
      factory’s assembly line;                              Equally important to Joazeiro is the realization that   Terrestrial Microbiology in Marburg, Germany; and
      there are schematics, parts,                       Rqc2 serves as a “living” molecular fossil, illuminating   Julie Maupin-Furlow of the University of  Florida in
      workers, motors, quality                           new insights about the ancient ancestral organism that   Gainesville, Fla.
      control  systems  and  even                        emerged some four billion years ago to form the very      The research was supported by the National
      recycling crews. If the                            base of the tree of life that evolved into the planet’s   Institutes of Health (NS075719, NS102414, GM57498),
      cell’s recycling process                           biodiversity today.                               the Deutsche Forschungsgemeinschaft in Germany
      falters, abnormal protein                             “Shortly after cells invented how to make proteins,   (SFB1036, SFB740)  and  the  Max  Planck Society  in
      fragments accumulate,                              they were also faced with determining how to deal   Germany.
      potentially causing the                            with incompletely made proteins,” Joazeiro says. “The
      cell’s death. In nerve cells,  Claudio Joazeiro    analyses suggest that a Rqc2 homolog in the last universal   The Scripps Research Institute News on page 17
      the process is linked to a
      variety of neurodegenerative diseases, including ALS
      and dementia.
         A new study from the lab of Claudio Joazeiro, Ph.D.,
      published online in the journal Cell on May 30, uncovers
      how simpler organisms – bacteria and archaea – manage
      the recycling of incomplete proteins. The discoveries not
      only offer new directions for fighting the virulence of
      some of humanity’s most dangerous pathogens, including
      listeria, staph and streptococcus, they have implications
      for our understanding of how life itself evolved.
         Joazeiro’s group found the mechanism isn’t so
      different from one they previously uncovered in plant,
      animal and fungal cells.
         “We know that as cells are making proteins, this
      process is occasionally halted due to errors,” says
      Joazeiro, who has joint appointments in the Scripps
      Research Department of Molecular Medicine in Jupiter,
      Fla., and the Center for Molecular Biology of Heidelberg
      University in Germany.
         “One of the problems with this is that the accumulation
      of partially formed proteins may be toxic. So, in our
      lab, we’re asking how do cells sense this, and how do
      they disassemble these proteins and recycle the building
      blocks?”
         Organelles called ribosomes serve as the protein-
      assembly motors within cells. If they stall during the
      process of piecing together the parts – amino acids – cells
      have a variety of systems for responding. In human and
      other eukaryotic cells, when a ribosome jams, rescue
      factors split it open. A protein called Rqc2, also known
      as NEMF, zooms in and recruits another protein – the
      ubiquitin ligase Ltn1, also called listerin. The Joazeiro
      lab previously discovered that Ltn1 marks the truncated
      protein fragment on ribosomes with a destruction
      tag called ubiquitin. Protease saws then handle the
      demolition.
         Underscoring the importance of this recycling process,
      Joazeiro discovered in 2009 that mutations in Ltn1 can
      cause the death of nerve cells in mice, resulting in ALS-
      like symptoms.                                                                                 y!
         Bacteria have related, but somewhat more direct
      systems for addressing halted ribosomes and their protein
      fragments, according to the Cell report. Studying the
      bacterium B. subtilis, the Joazeiro team found that Rqc2
      itself marks the protein fragment with a flag – a polymer                              Fireworks can be yours everyday
      made of the amino acid alanine. Thus flagged, proteases
      come to cut up the bad fragment.                                                   with the right person! #LoveO Line
         Previous  studies had suggested that in  some
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